Whitmer, Jonathan K: search on Z-Library

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1

Adaptive enhanced sampling by force-biasing using neural networks

Guo, Ashley Z., Sevgen, Emre, Sidky, Hythem, Whitmer, Jonathan K., Hubbell, Jeffrey A., de Pablo, Juan J.

Journal:

The Journal of Chemical Physics

Year:

2018

Language:

english

File:

PDF, 4.66 MB

english, 2018

2

Epoxy paint failure in B-52 fuel tanks: Part I—Preliminary development of a model for the process

Amanda Aliband, Daniel W. Lenz, Jonathan DuPois, Kevin Alliston, Vincent Storhaug, Laura E. Stevenson, Travis Whitmer, Rex Cash, Dennis Burns, William T.K. Stevenson

Journal:

Progress in Organic Coatings (Elsevier)

Year:

2006

Language:

english

File:

PDF, 660 KB

english, 2006

3

Modeling the polydomain-monodomain transition of liquid crystal elastomers

Whitmer, Jonathan K., Roberts, Tyler F., Shekhar, Raj, Abbott, Nicholas L., de Pablo, Juan J.

Journal:

Physical Review E

Year:

2013

Language:

english

File:

PDF, 1.09 MB

english, 2013

4

Fluid–solid boundary conditions for multiparticle collision dynamics

Whitmer, Jonathan K, Luijten, Erik

Journal:

Journal of Physics Condensed Matter

Year:

2010

Language:

english

File:

PDF, 925 KB

english, 2010

5

Isotropic–nematic phase transition in the Lebwohl–Lasher model from density of states simulations

Shekhar, Raj, Whitmer, Jonathan K., Malshe, Rohit, Moreno-Razo, J. A., Roberts, Tyler F., de Pablo, Juan J.

Journal:

The Journal of Chemical Physics

Year:

2012

Language:

english

File:

PDF, 935 KB

english, 2012

6

Liquid-crystal mediated nanoparticle interactions and gel formation

Whitmer, Jonathan K., Joshi, Abhijeet A., Roberts, Tyler F., de Pablo, Juan J.

Journal:

The Journal of Chemical Physics

Year:

2013

Language:

english

File:

PDF, 1.74 MB

english, 2013

7

Nematic-Field-Driven Positioning of Particles in Liquid Crystal Droplets

Whitmer, Jonathan K., Wang, Xiaoguang, Mondiot, Frederic, Miller, Daniel S., Abbott, Nicholas L., de Pablo, Juan J.

Journal:

Physical Review Letters

Year:

2013

Language:

english

File:

PDF, 1.19 MB

english, 2013

8

Basis Function Sampling: A New Paradigm for Material Property Computation

Whitmer, Jonathan K., Chiu, Chi-cheng, Joshi, Abhijeet A., de Pablo, Juan J.

Journal:

Physical Review Letters

Year:

2014

Language:

english

File:

PDF, 479 KB

english, 2014

9

An algebraic geometric method for calculating phase equilibria from fundamental equations of state

Sidky, Hythem, Liddell, Alan C, Mehta, Dhagash, Hauenstein, Jonathan D., Whitmer, Jonathan K

Journal:

Industrial & Engineering Chemistry Research

Year:

2016

Language:

english

File:

PDF, 1.15 MB

english, 2016

10

The Emergent Nematic Phase in Ionic Chromonic Liquid Crystals

Sidky, Hythem, Whitmer, Jonathan K

Journal:

Journal of Physical Chemistry B

Year:

2017

Language:

english

File:

PDF, 4.77 MB

english, 2017

11

Automated determination of n -cyanobiphenyl and n -cyanobiphenyl binary mixtures elastic constants in the nematic phase from molecular simulation

Shi, Jiale, Sidky, Hythem, Whitmer, Jonathan K.

Journal:

Mol. Syst. Des. Eng.

Year:

2020

File:

PDF, 1.72 MB

2020

12

Simulating the thermodynamics of charging in weak polyelectrolytes: the Debye–Hückel limit

Rathee, Vikramjit S, Sikora, Benjamin J, Sidky, Hythem, Whitmer, Jonathan K

Journal:

Materials Research Express

Year:

2018

Language:

english

File:

PDF, 2.27 MB

english, 2018

13

Accurate Determination of Cavitand Binding Free Energies via Unrestrained Advanced Sampling

Leonhard, Anne C., Whitmer, Jonathan K.

Journal:

Journal of Chemical Theory and Computation

Year:

2019

Language:

english

File:

PDF, 1.69 MB

english, 2019

14

Triblock Colloids for Directed Self-Assembly

Chen, Qian, Diesel, Erich, Whitmer, Jonathan K., Bae, Sung Chul, Luijten, Erik, Granick, Steve

Journal:

Journal of the American Chemical Society

Year:

2011

Language:

english

File:

PDF, 3.23 MB

english, 2011

15

Sculpting bespoke mountains: Determining free energies with basis expansions

Whitmer, Jonathan K., Fluitt, Aaron M., Antony, Lucas, Qin, Jian, McGovern, Michael, de Pablo, Juan J.

Journal:

The Journal of Chemical Physics

Year:

2015

Language:

english

File:

PDF, 2.15 MB

english, 2015

16

In Silico Measurement of Elastic Moduli of Nematic Liquid Crystals

Sidky, Hythem, de Pablo, Juan J., Whitmer, Jonathan K.

Journal:

Physical Review Letters

Year:

2018

Language:

english

File:

PDF, 2.29 MB

english, 2018

17

Reliability of Magnetic Resonance Imaging Prediction of Anterior Cruciate Ligament Autograft Size and Comparison of Radiologist and Orthopaedic Surgeon Predictions

Hanna, Andrew, Hollnagel, Katharine, Whitmer, Kelley, John, Christopher, Johnson, Brent, Godin, Jonathan, Miller, Thomas

Journal:

Orthopaedic Journal of Sports Medicine

Year:

2019

File:

PDF, 450 KB

2019

18

Elastic response and phase behavior in binary liquid crystal mixtures

Sidky, Hythem, Whitmer, Jonathan K.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.97 MB

english, 2016

19

Reliability of Magnetic Resonance Imaging Prediction of Anterior Cruciate Ligament Autograft Size and Comparison of Radiologist and Orthopaedic Surgeon Predictions

Hanna, Andrew, Hollnagel, Katharine, Whitmer, Kelley, John, Christopher, Johnson, Brent, Godin, Jonathan, Miller, Thomas

Journal:

Orthopaedic Journal of Sports Medicine

Year:

2019

Language:

english

File:

PDF, 450 KB

english, 2019

20

Reliable mixture critical point computation using polynomial homotopy continuation

Sidky, Hythem, Whitmer, Jonathan K., Mehta, Dhagash

Journal:

Year:

2016

Language:

english

File:

PDF, 260 KB

english, 2016

21

Learning free energy landscapes using artificial neural networks

Sidky, Hythem, Whitmer, Jonathan K.

Journal:

The Journal of Chemical Physics

Year:

2018

Language:

english

File:

PDF, 4.12 MB

english, 2018

22

Influence of Hydrodynamics on Cluster Formation in Colloid−Polymer Mixtures

Whitmer, Jonathan K., Luijten, Erik

Journal:

Journal of Physical Chemistry B

Year:

2011

Language:

english

File:

PDF, 2.52 MB

english, 2011

23

Surface Adsorption in Nonpolarizable Atomic Models

Whitmer, Jonathan K., Joshi, Abhijeet A., Carlton, Rebecca J., Abbott, Nicholas L., de Pablo, Juan J.

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 3.38 MB

english, 2014

24

Weak polyelectrolyte complexation driven by associative charging

Rathee, Vikramjit S., Zervoudakis, Aristotle J., Sidky, Hythem, Sikora, Benjamin J., Whitmer, Jonathan K.

Journal:

The Journal of Chemical Physics

Year:

2018

Language:

english

File:

PDF, 2.21 MB

english, 2018

25

Surveying the free energy landscape of clusters of attractive colloidal spheres

Huang, Shanghui, Quevillon, Michael J., Kyhl, Soren, Whitmer, Jonathan K.

Journal:

The Journal of Chemical Physics

Year:

2020

File:

PDF, 2.02 MB

2020

26

Chirality-selected phase behaviour in ionic polypeptide complexes

Perry, Sarah L., Leon, Lorraine, Hoffmann, Kyle Q., Kade, Matthew J., Priftis, Dimitrios, Black, Katie A., Wong, Derek, Klein, Ryan A., Pierce, Charles F., Margossian, Khatcher O., Whitmer, Jonathan K

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 1.92 MB

english, 2015

27

Hierarchical Coupling of First Principles Molecular Dynamics with Advanced Sampling Methods

Sevgen, Emre, Giberti, Federico, Sidky, Hythem, Whitmer, Jonathan K, Galli, Giulia, Gygi, Francois, de Pablo, Juan J.

Journal:

Journal of Chemical Theory and Computation

Year:

2018

Language:

english

File:

PDF, 7.74 MB

english, 2018

28

Explicit Ion Effects on the Charge and Conformation of Weak Polyelectrolytes

Rathee, Vikramjit, Sidky, Hythem, Sikora, Benjamin, Whitmer, Jonathan

Journal:

Year:

2019

File:

PDF, 2.89 MB

2019

29

Development of a TaqMan Array Card for Acute Febrile Illness Outbreak Investigation and Surveillance of Emerging Pathogens including Ebola Virus

Liu, Jie, Ochieng, Caroline, Wiersma, Steve, Ströher, Ute, Towner, Jonathan S., Whitmer, Shannon, Nichol, Stuart T., Moore, Christopher C., Kersh, Gilbert J., Kato, Cecilia, Sexton, Christopher, Peter

Journal:

Journal of Clinical Microbiology

Year:

2015

Language:

english

File:

PDF, 521 KB

english, 2015

30

An experimentally-informed coarse-grained 3-site-per-nucleotide model of DNA: Structure, thermodynamics, and dynamics of hybridization

Hinckley, Daniel M., Freeman, Gordon S., Whitmer, Jonathan K., de Pablo, Juan J.

Journal:

The Journal of Chemical Physics

Year:

2013

Language:

english

File:

PDF, 1.41 MB

english, 2013

31

DNA Shape Dominates Sequence Affinity in Nucleosome Formation

Freeman, Gordon S., Lequieu, Joshua P., Hinckley, Daniel M., Whitmer, Jonathan K., de Pablo, Juan J.

Journal:

Physical Review Letters

Year:

2014

Language:

english

File:

PDF, 670 KB

english, 2014

32

A coarse-grained thermodynamic model for the predictive engineering of valence-selective membranes

Rathee, Vikramjit Singh, Qu, Siyi, Phillip, William A., Whitmer, Jonathan K.

Journal:

Mol. Syst. Des. Eng.

Year:

2016

Language:

english

File:

PDF, 2.38 MB

english, 2016

33

Erratum: “Liquid-crystal mediated nanoparticle interactions and gel formation” [J. Chem. Phys. 138, 194903 (2013)]

Whitmer, Jonathan K., Joshi, Abhijeet A., Roberts, Tyler F., de Pablo, Juan J.

Journal:

The Journal of Chemical Physics

Year:

2014

Language:

english

File:

PDF, 276 KB

english, 2014

34

The role of associative charging in the entropy - energy balance of polyelectrolyte complexes

Rathee, Vikramjit S., Sidky, Hythem, Sikora, Benjamin J, Whitmer, Jonathan K

Journal:

Journal of the American Chemical Society

Year:

2018

Language:

english

File:

PDF, 2.86 MB

english, 2018

35

Correction: Automated determination of n -cyanobiphenyl and n -cyanobiphenyl binary mixtures elastic constants in the nematic phase from molecular simulation

Shi, Jiale, Sidky, Hythem, Whitmer, Jonathan K.

Journal:

Mol. Syst. Des. Eng.

Year:

2020

File:

PDF, 112 KB

2020

36

Elastic properties of common Gay–Berne nematogens from density of states (DOS) simulations

Sidky, Hythem, Whitmer, Jonathan K.

Journal:

Liquid Crystals

Year:

2016

Language:

english

File:

PDF, 2.05 MB

english, 2016

37

Sedimentation of aggregating colloids

Whitmer, Jonathan K., Luijten, Erik

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 647 KB

english, 2011

38

Orientationally Glassy Crystals of Janus Spheres

Jiang, Shan, Yan, Jing, Whitmer, Jonathan K., Anthony, Stephen M., Luijten, Erik, Granick, Steve

Journal:

Physical Review Letters

Year:

2014

Language:

english

File:

PDF, 2.12 MB

english, 2014

39

Interfacial Tension of Polyelectrolyte Complex Coacervate Phases

Qin, Jian, Priftis, Dimitrios, Farina, Robert, Perry, Sarah L., Leon, Lorraine, Whitmer, Jonathan, Hoffmann, Kyle, Tirrell, Matthew, de Pablo, Juan J.

Journal:

ACS Macro Letters

Year:

2014

Language:

english

File:

PDF, 818 KB

english, 2014

40

Coarse-grained modeling of DNA curvature

Freeman, Gordon S., Hinckley, Daniel M., Lequieu, Joshua P., Whitmer, Jonathan K., de Pablo, Juan J.

Journal:

The Journal of Chemical Physics

Year:

2014

Language:

english

File:

PDF, 841 KB

english, 2014

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